Publication spotlight: recent student publications

Publication spotlight is a series designed to showcase noteworthy BCMB publications from students and faculty. If you have a recent publication that you are proud of, tell us about it.

-Matt Shirley

BCMB students are constantly producing high quality publications, though sometimes it may be difficult to follow a colleague’s work which falls outside your own field. That is why this first issue of the Publication spotlight will focus on a roll-up of this year’s publications from BCMB students. A list of hard-earned publications follows:

August

Hermann GJ, Scavarda E, Weis AM, Saxton DS, Thomas LL, Salesky R, Somhegyi H,
Curtin TP, Barrett A, Foster OK, Vine A, Erlich K, Kwan E, Rabbitts BM, Warren K.
C. elegans BLOC-1 Functions in Trafficking to Lysosome-Related Gut Granules. PLoS
One. 2012;7(8):e43043. Epub 2012 Aug 15. PubMed PMID: 22916203.

Nguyen-Ngoc KV, Cheung KJ, Brenot A, Shamir ER, Gray RS, Hines WC, Yaswen P,
Werb Z, Ewald AJ. ECM microenvironment regulates collective migration and local
dissemination in normal and malignant mammary epithelium. Proc Natl Acad Sci U S
A. 2012 Aug 23. [Epub ahead of print] PubMed PMID: 22923691.

July

Zhang H, Zou B, Yu H, Moretti A, Wang X, Yan W, Babcock JJ, Bellin M, McManus
OB, Tomaselli G, Nan F, Laugwitz KL, Li M. Modulation of hERG potassium channel
gating normalizes action potential duration prolonged by dysfunctional KCNQ1
potassium channel. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11866-71. Epub
2012 Jun 28. PubMed PMID: 22745159; PubMed Central PMCID: PMC3406814.

West-Foyle H, Robinson DN. Cytokinesis mechanics and mechanosensing.
Cytoskeleton (Hoboken). 2012 Jul 3. doi: 10.1002/cm.21045. [Epub ahead of print]
PubMed PMID: 22761196.

Shirley MD, Baugher JD, Stevens EL, Tang Z, Gerry N, Beiswanger CM, Berlin DS,
Pevsner J. Chromosomal variation in lymphoblastoid cell lines. Hum Mutat. 2012
Jul;33(7):1075-86. doi: 10.1002/humu.22062. Epub 2012 Apr 16. PubMed PMID:
22374857.

June

Zhong J, Kim MS, Chaerkady R, Wu X, Huang TC, Getnet D, Mitchell CJ, Palapetta
SM, Sharma J, O’Meally RN, Cole RN, Yoda A, Moritz A, Loriaux MM, Rush J,
Weinstock DM, Tyner JW, Pandey A. TSLP signaling network revealed by SILAC-based
phosphoproteomics. Mol Cell Proteomics. 2012 Jun;11(6):M112.017764. Epub 2012 Feb
16. PubMed PMID: 22345495.

Stevens EL, Heckenberg G, Baugher JD, Roberson ED, Downey TJ, Pevsner J.
Consanguinity in Centre d’Étude du Polymorphisme Humain (CEPH) pedigrees. Eur J
Hum Genet. 2012 Jun;20(6):657-67. doi: 10.1038/ejhg.2011.266. Epub 2012 Jan 25.
PubMed PMID: 22274586.

Ewald AJ, Huebner RJ, Palsdottir H, Lee JK, Perez MJ, Jorgens DM, Tauscher AN, Cheung KJ, Werb Z, Auer M. Mammary collective cell migration involves transient loss of epithelial features and individual cell migration within the epithelium. J Cell Sci. 2012 Jun 1;125(Pt 11):2638-54. Epub 2012 Feb 17. PubMed PMID: 22344263.

May

Hatori Y, Clasen S, Hasan NM, Barry AN, Lutsenko S. Functional partnership of
the copper export machinery and glutathione balance in human cells. J Biol Chem.
2012 Aug 3;287(32):26678-87. Epub 2012 May 30. PubMed PMID: 22648419.

Hu JH, Yang L, Kammermeier PJ, Moore CG, Brakeman PR, Tu J, Yu S, Petralia RS,
Li Z, Zhang PW, Park JM, Dong X, Xiao B, Worley PF. Preso1 dynamically regulates
group I metabotropic glutamate receptors. Nat Neurosci. 2012 May 6. doi:
10.1038/nn.3103. [Epub ahead of print] PubMed PMID: 22561452.

Tamura Y, Onguka O, Hobbs AE, Jensen RE, Iijima M, Claypool SM, Sesaki H. Role
for two conserved intermembrane space proteins, Ups1p and Up2p, in
intra-mitochondrial phospholipid trafficking. J Biol Chem. 2012 May
4;287(19):15205-18. Epub 2012 Mar 7. PubMed PMID: 22403410.

Lessard JC, Coulombe PA. Keratin 16-null mice develop palmoplantar
keratoderma, a hallmark feature of pachyonychia congenita and related disorders.
J Invest Dermatol. 2012 May;132(5):1384-91. doi: 10.1038/jid.2012.6. Epub 2012
Feb 16. PubMed PMID: 22336941.

April

Ferrando IM, Chaerkady R, Zhong J, Molina H, Jacob HK, Herbst-Robinson K,
Dancy BM, Katju V, Bose R, Zhang J, Pandey A, Cole PA. Identification of Targets
of c-Src Tyrosine Kinase by Chemical Complementation and Phosphoproteomics. Mol
Cell Proteomics. 2012 Aug;11(8):355-69. Epub 2012 Apr 12. PubMed PMID: 22499769.

Mularoni L, Zhou Y, Bowen T, Gangadharan S, Wheelan SJ, Boeke JD.
Retrotransposon Ty1 integration targets specifically positioned asymmetric
nucleosomal DNA segments in tRNA hotspots. Genome Res. 2012 Apr;22(4):693-703.
Epub 2012 Jan 4. PubMed PMID: 22219510.

March

Miyamoto T, DeRose R, Suarez A, Ueno T, Chen M, Sun TP, Wolfgang MJ, Mukherjee
C, Meyers DJ, Inoue T. Rapid and orthogonal logic gating with a
gibberellin-induced dimerization system. Nat Chem Biol. 2012 Mar 25;8(5):465-70.
doi: 10.1038/nchembio.922. PubMed PMID: 22446836.

Dancy BC, Ming SA, Papazyan R, Jelinek CA, Majumdar A, Sun Y, Dancy BM, Drury
WJ 3rd, Cotter RJ, Taverna SD, Cole PA. Azalysine analogues as probes for protein
lysine deacetylation and demethylation. J Am Chem Soc. 2012 Mar
21;134(11):5138-48. Epub 2012 Mar 12. PubMed PMID: 22352831.

Shan L, Deng K, Shroff NS, Durand CM, Rabi SA, Yang HC, Zhang H, Margolick JB,
Blankson JN, Siliciano RF. Stimulation of HIV-1-specific cytolytic T lymphocytes
facilitates elimination of latent viral reservoir after virus reactivation.
Immunity. 2012 Mar 23;36(3):491-501. Epub 2012 Mar 8. PubMed PMID: 22406268.

DeRose R, Pohlmeyer C, Umeda N, Ueno T, Nagano T, Kuo S, Inoue T.
Spatio-temporal manipulation of small GTPase activity at subcellular level and on
timescale of seconds in living cells. J Vis Exp. 2012 Mar 9;(61). pii: 3794. doi:
10.3791/3794. PubMed PMID: 22433289.

Rodriguez S, Wolfgang MJ. Targeted chemical-genetic regulation of protein
stability in vivo. Chem Biol. 2012 Mar 23;19(3):391-8. PubMed PMID: 22444594;
PubMed Central PMCID: PMC3314227.

Currier DG, Polk RC, Reeves RH. A Sonic hedgehog (Shh) response deficit in
trisomic cells may be a common denominator for multiple features of Down
syndrome. Prog Brain Res. 2012;197:223-36. PubMed PMID: 22541295.

Congratulations, everyone!

One thought on “Publication spotlight: recent student publications

  1. Pingback: September Issue | BCMB News

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